Poster Abstracts
Function Prediction from Structure
• PDZ domain similarity and ligand specificity
Cristina Sisu and Guy H. Grant
• Identification of potential multidrug resistance reversal agents by
highthroughput virtual screening
Sergio Mares-Samano, Raj Badhan and Jeffrey Penny
• Motif Identification in the Motor Protein Prestin
Kathryn M Dempsey, Dhundy Bastola, and Hesham Ali
• Locating Carbon Dioxide Binding Sites in Proteins using a Pharmacophore-Based Approach
M. L. Drummond, A. K. Wilson and T. R. Cundari
• Structure-based identification of aromatic surface motifs involved in proteincarbohydrate recognition
Andrew C. Doxey, Zhenyu Cheng, Brendan J. McConkey
Best Poster Award
Function Prediction from Sequences/Networks
• Genomic Annotation of Ovine Herpesvirus-2
Muhammad Maqsud Hossain, S A M Khairul Basha1 and George Russell
• Bayesian inference on multilocus genotypic effects using a Gibbs sampler
Junhee An, Younyoung Kim, and Chaeyoung Lee
• Optimal sample size for testing multilocus genotypic effects by a Bayesian method using a Gibbs sampler
Jihye Ryu, Younyoung Kim, and Chaeyoung Lee
• Multilocus genotypic association with vascular dementia using multifactor dimensionality reduction and entropy decomposition
Jiyoung Woo, Minyoung Kong, Younyoung Kim, and Chaeyoung Lee
• Optimized Immunogenic Peptide for Dual Oxidases 2 (Duox2) Antibodies Development
Yun Ge, YongZhong Wu, Krishnendu Roy, and James Doroshow
• Predicting Protein Functions via Consensus of a Variety of Resources
Chenggang Yu
• The Intrinsic Barcode Feature of a Genome and its Applications
Fengfeng Zhou, Victor Olman, Xizeng Mao, and Ying Xu
• Finding functional sequence elements based on co-occurrence in biological networks
Reza Salavati
• Prediction of protein mutant stability by combining a support vector machine with a coarse grained model calculation
Ge Tan, Bingchuan Liu, Cheng Zhang, and Bairong Shen
• WildSpan: Identification of RNA-Binding residues in Protein by Concurrently Conserved Pattern Mining from Homologous Sequences
Chen-Ming Hsu
• Sequence fingerprints of host protein mimicry in bacterial pathogens
Andrew C. Doxey, Trevor Charles, Brendan J McConkey
Networks Creation
• Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming
Serdar Bozdag, Timothy J. Close, and Stefano Lonardi
• Predicting Conserved Metabolic Pathways Leading to an Important Final Product
Shuen Yi Leung
Molecular-Level Actions
• Belief Propagation Reveals Allosteric Mechanisms in Proteins
Hetunandan Kamisetty, Arvind Ramanathan, and Christopher James Langmead
• Dynamic Invariants in Protein Folding Pathways Revealed by Tensor Analysis
Arvind Ramanathan and Christopher James Langmead
Microarray Data Analysis
• An Integrated Approach to Feature Selection and Classification for Microarray Data with Outlier Detection
Y.Y. Leung and Y.S. Hung
Data Mining/Databases
• New Method to Capture Context-dependent Quantitative Data to Build a Data Warehouse for Chronic Obstructive Pulmonary Disease
Carole Mathis, Pascal Cosandier, Grégory Vuillaume, Peter Sperisen, Gerd
Kallischnigg, Andrea Wohlsen, Christelle Haziza, Michael Peck, Rolf Weitkunat, and Zheng Sponsiello-Wang
• Data Mining and Visualization of Copy Number Variants in Disease Processes
Andrew Dellinger, M. Yu, and Y.J. Li
• LABnovo: A novel open-sourced web service for managing laboratory data and protocols
Sam Smits
• The BioVelo Query Language and its Web Interfaces
Mario Latendresse and Peter D. Karp